publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. npj Digital Medicine
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    Clinical decision support using pseudo-notes from multiple streams of EHR Data
    Simon A Lee, Sujay Jain, Alex Chen, and 4 more authors
    npj Digital Medicine, 2025
    Code
  2. NeurIPS 2025
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    How different is my deep learning model from yours?
    Simon A Lee, Jiahang (Hank) Sha, and Jeffrey N Chiang
    Under Review at NeurIPS, 2025
  3. NeurIPS 2025
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    How we evaluate is more important than what we evaluate for foundation models
    Simon A Lee, John Lee, and Jeffrey N Chiang
    Under Review at NeurIPS, 2025
  4. ICML 2025 Spotlight
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    Raptor: Scalable Train-Free Embeddings for 3D Medical Volumes Leveraging Pretrained 2D Foundation Models
    Ulzee An, Moonseong Jeong, Simon Austin Lee, and 3 more authors
    In Proceedings of the 42nd International Conference on Machine Learning (ICML), 2025
    Code
  5. SIGKDD 2025
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    MEDS: Building Models and Tools in a Reproducible Health AI Ecosystem
    Matthew B. A. McDermott, Justin Xu, Teya S. Bergamaschi, and 11 more authors
    In Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2 (KDD ’25), 2025
    DOI Code
  6. CHIL Conference 2025
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    A Case Study Exploring the Current Landscape of Synthetic Medical Record Generation with Commercial LLMs
    Yihan Lin, Zhirong Bella Yu, and Simon Lee
    Conference on Health Inference and Learning (CHIL) 2025, 2025
    PDF
  7. arXiv
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    Clinical ModernBERT: An efficient and long context encoder for biomedical text
    Simon A Lee, Anthony Wu, and Jeffrey N Chiang
    arXiv preprint arXiv:2504.03964, 2025
    PDF Code
  8. AAAI MedHealth
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    Dk-behrt: Teaching language models international classification of disease (icd) codes using known disease descriptions
    Ulzee An, Simon A Lee, Moonseong Jeong, and 3 more authors
    In Proceedings of The First AAAI Bridge Program on AI for Medicine and Healthcare, 2025
    PDF Code
  9. AAAI MedHealth
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    Using Foundation Models to Prescribe Patients Proper Antibiotics
    Simon A. Lee, Helio Halperin, Yanai Halperin, and 2 more authors
    In Proceedings of The First AAAI Bridge Program on AI for Medicine and Healthcare, 2025
    PDF Code

2024

  1. arXiv
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    Emergency Department Decision Support using Clinical Pseudo-notes
    Simon A. Lee, Sujay Jain, Alex Chen, and 4 more authors
    2024
    PDF Code
  2. ML4H Demo
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    MEDS Decentralized, Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
    Matthew B.A. McDermott, Aleksia Kolo, Chao Pang, and 28 more authors
    In ML4H Demo Track, 2024
    PDF Code
  3. NeurIPS Workshop
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    FEET: A Framework for Evaluating Embedding Techniques
    Simon A Lee, John Lee, and Jeffrey N Chiang
    NeurIPS SFLLM Workshop, 2024
    PDF Code
  4. ICML AI4Science
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    Text Serialization and Their Relationship with the Conventional Paradigms of Tabular Machine Learning
    Kyoka Ono, and Simon A Lee
    International Conference for Machine Learning, AI4Science Workshop, 2024
    PDF
  5. arXiv
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    Do Large Language Models understand Medical Codes?
    Timothy Lindsey, and Simon A Lee
    arXiv preprint arXiv:2403.10822, 2024
    PDF